YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72395868, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	47	0.91
Non-Cytoplasmic	48	83	0.55
Transmembrane Helix	84	108	0.84
Cytoplasmic	109	114	0.45
Transmembrane Helix	115	134	0.86
Non-Cytoplasmic	135	138	0.43
Transmembrane Helix	139	160	0.88
Cytoplasmic	161	167	0.55
Transmembrane Helix	168	189	0.92
Non-Cytoplasmic	190	216	0.48
Transmembrane Helix	217	240	0.81
Cytoplasmic	241	259	0.45
Transmembrane Helix	260	285	0.89
Non-Cytoplasmic	286	300	0.46
Transmembrane Helix	301	321	0.80
Cytoplasmic	322	326	0.32
Transmembrane Helix	327	347	0.87
Non-Cytoplasmic	348	356	0.33

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEASTDVKI STHATLNFFE ARKMCIIFFL AFVMVAGGMV TICLGTYQIS FVEVYSIIAT  60
   61 HIFSPNIVGS LDKLKNMIVW NIRFPRVIMA ITVGIGLSVA GAVYQGCFRN PLVEPYILGV 120
  121 SSGAAFGAAL GIVYPQIFLS IQLGAFLFAL LSVFLAYTLA RSRGQTPVVT LVLAGIIIGS 180
  181 IFSAFVSIMK YLSNDTQLRE IVFWMMGGFY YTQWDDVKLT VPVVLISVAI MWFFGWKLNV 240
  241 LSMGDEEARA LGVNPEVFKF IFIVLATLVT AVCVSSVGIV AWVGLMMPHA ARLIQGPDNR 300
  301 FVIPTAALMG GVYIIFCDTL ARTLTSAEIP IGIITAIVGA PYLLYLLRSK EKEIFG