YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72397073, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKNRNLNE KEGKENRGSQ TNESQTKESR EKKKSESLGV STLAVHAGAK PDPATGARSV  60
   61 PIYQTAAYVF KDAEEAADLF GLRKEGNIYT RLMNPTTDVF EKRIAALEGG IGALAVASGM 120
  121 AAITTALLTF TRPGDEIISG DKLYGGTYEL FNYTFPKLGR TVKFVDVGKP EEFKNAISEK 180
  181 TKAIYVESIG NPGLDIPDFE KLAEIAHGAG IPFVVDNTVS PLILRPIDHG VDIVVYSATK 240
  241 FIGGHGTSIG GVIVDSGNFY WKPEKFPEIC EPDPGYHGLK YKEAFGKAAF IAKARVQFIR 300
  301 DTGACISPFN SFLFTLGLET LPLRMKKHCD NALEIAKFLE KHPKVSWVSY PGLESHCSYE 360
  361 LAKKYLKSGY GALIGFGIKG GARECKKFIE GLEIFSHLAN IGDAKSLVIH PASTTHEQLS 420
  421 KEEQLACGVT EDFIRLSIGI EDAKDLISDI KQALSEV

Type	Start	End	Confidence
Cytoplasmic	1	108	0.68
Transmembrane Helix	109	128	0.65
Non-Cytoplasmic	129	457	0.98