YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48837813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWDIIHFFQ QLSPLEQALL AGIFTWGMTA LGAASVFLTR EVSRRILDLM LGFTAGVMVA  60
   61 ASYWSLLAPA IEMSEGESIP AWFPAVIGFL LGGLFLRGID KILPHLQFGS GTEAAEGLKT 120
  121 SWRRNTLLVL AVTLHNIPEG LAVGVAFGAA ASGYTYNLPA AVSLAVGIGI QNLPEGLVVS 180
  181 VPLRREGMSC FKSFNYGQSS AIVEPISSVI GAAAVILIQP ILPYALAFAA GAMIFVVVEE 240
  241 IIPESQRGGN APLATIGTMI GFSVMMVLDV AFG

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	39	0.94
Cytoplasmic	40	48	0.81
Transmembrane Helix	49	68	0.94
Non-Cytoplasmic	69	78	0.83
Transmembrane Helix	79	99	0.93
Cytoplasmic	100	126	0.96
Transmembrane Helix	127	151	0.83
Non-Cytoplasmic	152	159	0.69
Transmembrane Helix	160	181	0.69
Cytoplasmic	182	193	0.75
Transmembrane Helix	194	218	0.66
Non-Cytoplasmic	219	220	0.58
Transmembrane Helix	221	242	0.79
Cytoplasmic	243	250	0.68
Transmembrane Helix	251	272	0.90
Non-Cytoplasmic	273	273	0.81