YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72162784, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.94
Transmembrane Helix	31	53	0.92
Non-Cytoplasmic	54	91	0.92
Transmembrane Helix	92	113	0.92
Cytoplasmic	114	120	0.82
Transmembrane Helix	121	141	0.92
Non-Cytoplasmic	142	146	0.67
Transmembrane Helix	147	167	0.92
Cytoplasmic	168	175	0.85
Transmembrane Helix	176	200	0.89
Non-Cytoplasmic	201	219	0.89
Transmembrane Helix	220	242	0.91
Cytoplasmic	243	268	0.87
Transmembrane Helix	269	294	0.86
Non-Cytoplasmic	295	308	0.79
Transmembrane Helix	309	329	0.88
Cytoplasmic	330	337	0.74
Transmembrane Helix	338	357	0.94
Non-Cytoplasmic	358	367	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAAKQADP LPASRPDSTQ VRRATVLRGT VLLTVLAIAL GAVALVAAGI GAYHIPPLEV  60
   61 AGSVFRGLGL DWGEAADPLA DEVLWNVRFP RVVLAMIVGS SLALAGAMMQ GIFGNPLAEP 120
  121 GVIGVSSGAT VGAVLIIALG ASALGYWTVI VASFLSGMVT TVLVYVLSRS GGRTEVVTLL 180
  181 LTGIAVNAVA GALIGAATYF SEDAELRSIT NWQMGSLAAA TWFKVAAALP LAVAGIIAAP 240
  241 FFARRLDLLS LGESPARHLG VDVERMRQAL IVVIAMLTSS AVAFAGIISF VGLVVPHMVR 300
  301 MIAGPGHRVL LPASVLGGAL VLVAADLVAR VAAAPQEVPL GIITALVGGP FFFWLLYRTR 360
  361 ARQGGWA