YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48836601
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAAGTGSV FGLAVLLICG AAFFVAAETA FSRTVRLGGK APSRDHSATR RLRRVAADPA  60
   61 YHLNTALLLR VCCEVGATLA LAVGFLTWLG LTWGAVALTA VVTVLVDYVL VGVIPRILAR 120
  121 RFPGPTAEVA AAVVGPATVV LGPVARLLVR AGQLLLPRGG TDREGPFATE EELRHLVDLA 180
  181 ERGHVIDPEE RQMIHSVFQL DDTTVREVMI PRPDIVFLEG NVSIEEALEK ALSSGYSRIP 240
  241 VIGESLDDVI GIVYLKDLVA RLYDAWRANG GAPAPGRTIR DVMREPTYVP DSKPVDELLR 300
  301 EMQQQRIHLA VVIDEYGGTA GIVTIEDIVE EIVGEITDEY DDEVPPIEWL DDNRARVTAR 360
  361 LPLGELAELF GVEIDAPDVD TVGGLLAYAL GRVPVPGSQA EYAGLRLVAE DPARRRRKTA 420
  421 TVLVERLPAA VESTDPDQS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.82
Transmembrane Helix	8	27	0.92
Cytoplasmic	28	59	0.85
Transmembrane Helix	60	86	0.75
Non-Cytoplasmic	87	92	0.58
Transmembrane Helix	93	114	0.88
Cytoplasmic	115	128	0.70
Transmembrane Helix	129	149	0.81
Non-Cytoplasmic	150	439	0.87