YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48834858
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPPLVEPA DELTIDEVQR YSRHLIIPDV GMDGQKRLKN AKVLVVGAGG LGSPTLMYLA  60
   61 AAGVGTLGII DFDVVDESNL QRQVIHGQSD IGKPKAESAR ETIEEINPFV KVVLHKERLD 120
  121 SSNALEIFAD YDLILDGTDN FATRYLVNDA AVLLNKPYVW GSIFRFDGQV SVFWNEYGPN 180
  181 YRDLYPEPPP PGMVPSCAEG GVLGVLCATI GSVMANEAIK LITGIGDPLV GRLLIYDALE 240
  241 MTWRTVKIRK DPNAEPITEL IDYEAFCGTI PEEAQEAARG STITAKELKE KMDRGEDFFL 300
  301 VDVREKNEYE IVNIPGAVLI PKGEFLTGEA FAKLPQDKQI ILHCKSGGRS AEALAAVKKA 360
  361 GFSDAVHVGG GILSWIETVD PSLPKY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.64
Transmembrane Helix	43	62	0.59
Non-Cytoplasmic	63	386	0.93