YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sp\|A0LA38\|TRPF_MAGMM
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKIKICGI TSLADAWAAH DAGADAMGLV FYPGSPRAVT PQQVAQWRGD LPPFMTVVGL  60
   61 FVNATAQWIA STTALCSLDR IQLHGDESPA QCRAWGARAI RAIRVAEAAD LHDLARWPVG 120
  121 ALLLDAKIKG SYGGTGACFD WQLLGQAELP KPWILAGGLD PDNVEAAVRQ VQPYGVDVSS 180
  181 GVESAPGKKD HNKMHRFVAA VRRAQDGAGL

Type	Start	End	Confidence
Signal Peptide	1	18	0.89
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	210	0.98