YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117610185, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMHTPPGQL DTREQQANRC LIVGVWVNLL LTIAKIIAGV VGNSAAMVAD GIHSASDLIS  60
   61 DGAVWLGMRV ARQEPDEEHP YGHGRFETLA TLFIALALAG VAIGIVADAV DRIQWGGNVG 120
  121 TPLPVPTDVA LIAVVVSIFT KEALFHYTKR VGERLNQRAL VANAWHHRSD AVSSVAAMVG 180
  181 IVGAQLGWPV MDPIAAVVVA AILFKVAYGF LLEVYREFTD ASSAVDEKIQ SQINQVIENH 240
  241 PDVRSAHLVK ARRSGSDVQV DIHVVVKGTL SVSEGHQIAE QIRLHLLKEI MAVKDVLVHI 300
  301 DPEDDTKAEI PISYPNRGEV RRWIEPLVTA PFAGIDGLML HYTVDGIILD LVLHPAGNIS 360
  361 SADLQRGSET LAAAILAHPG GLVKEVRAHL ALCRQPQTTI V

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	39	0.88
Non-Cytoplasmic	40	48	0.63
Transmembrane Helix	49	68	0.73
Cytoplasmic	69	87	0.80
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	124	0.79
Transmembrane Helix	125	145	0.81
Cytoplasmic	146	165	0.86
Transmembrane Helix	166	186	0.84
Non-Cytoplasmic	187	193	0.66
Transmembrane Helix	194	212	0.91
Cytoplasmic	213	401	0.88