YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48826279
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTGVLINVG SVLFGGLIGG LVGNKLSEHF KAQLTMVFGV CSMGMGIYSI APMKNMPAVI  60
   61 FALVIGTAIG LIVHLGNGIN KGAALMQVPI SKIFPSEKLG MTHDEFISTL VTVIVLFCAS 120
  121 GTGIYGSLDS GMTGDSTILI SKSVLDFFTA AIFACNLGYV VSVIAIPQFI IFYILFLLAK 180
  181 FIYPLTTPDM ILDFKACGGF LMVATGFRMI NVKMFPVADM IPAMIVIMPL SWMWTNWIMP 240
  241 LL

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.74
Transmembrane Helix	5	24	0.87
Cytoplasmic	25	31	0.70
Transmembrane Helix	32	51	0.92
Non-Cytoplasmic	52	57	0.69
Transmembrane Helix	58	78	0.93
Cytoplasmic	79	105	0.75
Transmembrane Helix	106	128	0.89
Non-Cytoplasmic	129	146	0.73
Transmembrane Helix	147	179	0.75
Cytoplasmic	180	190	0.61
Transmembrane Helix	191	210	0.76
Non-Cytoplasmic	211	216	0.50
Transmembrane Helix	217	238	0.87
Cytoplasmic	239	242	0.54