YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48785121, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	25	0.95
Non-Cytoplasmic	26	31	0.70
Transmembrane Helix	32	54	0.92
Cytoplasmic	55	62	0.78
Transmembrane Helix	63	83	0.83
Non-Cytoplasmic	84	105	0.93
Transmembrane Helix	106	129	0.91
Cytoplasmic	130	141	0.78
Transmembrane Helix	142	162	0.93
Non-Cytoplasmic	163	181	0.91
Transmembrane Helix	182	202	0.96
Cytoplasmic	203	246	0.94
Transmembrane Helix	247	267	0.94
Non-Cytoplasmic	268	283	0.85
Transmembrane Helix	284	304	0.87
Cytoplasmic	305	315	0.83
Transmembrane Helix	316	338	0.86
Non-Cytoplasmic	339	353	0.74
Transmembrane Helix	354	372	0.78
Cytoplasmic	373	378	0.58
Transmembrane Helix	379	399	0.86
Non-Cytoplasmic	400	404	0.66
Transmembrane Helix	405	428	0.74
Cytoplasmic	429	441	0.64
Transmembrane Helix	442	463	0.91
Non-Cytoplasmic	464	465	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVHGSMLL VFAAIAIALL ILLITRYKVY PFLVLIIVSL LLGLASGMPI GTIVKSFETG  60
   61 NGNTLGHIAI VVGLGTMLGK MMAESGGAER IATTLIDFFG EKNIHWAMMI VAIIVGLPVF 120
  121 FEVGFVLLIP IAFNVAKRTN KSLLLVGLPM VAGLSVVHGL LPPHPAAMLA VQAYHADIGR 180
  181 TIAYGLIVGV PTAIVAGPLF ALMISRYIKL PKDNALASQF LGADETGAAN NGNGEQKTAP 240
  241 RRELPSFGVT LFTILLPVIL MLVGSWADLV FTPKTLANDL LRFVGNSDVA LLVAVLVSFW 300
  301 TFGASRGFDR EQIQKFCGEC LAPIAGITLI VGAGGGFGRV LMDSGISKEI VNAATSAHLS 360
  361 PLLFGWLVAA LIRLATGSAT VAMTTACGIV APIAAAGAVQ VKPELLVLAT GSGSLIFSHV 420
  421 NDGGFWLIKE YFGMTVGQTF KTWSLLETII SLMGLGLTFA LATVV