YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91686500, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLVMILLG VDYLRTRWRS LRLVGCISLL LGVVVFIDAL DSALYFPITP FALLLLLEGL  60
   61 ATLAVAWTGM GGQRTLRYVK GIAFSTAAAL ILVGHEHGNF ILSMIFGTLF LADGLLQIVS 120
  121 AKVVRYRTWR LAMIGGGVEI ALAIFFYQPY PTHYVGTVPY CLGLGLIFGG WNMFLLSTRV 180
  181 RRLDSNPAVA ANPGLDANDA VADAGIAAAS ELAASRVIAH EWDGPPAADE AALTVHVWTP 240
  241 VGSAKSEARR QPIVDRYIAA VDRNGVISTG HAALESPEGI YISLYPGVEI DRSPDDFARL 300
  301 LRATRENDVP GLFQPDYATE SKAWCPSTVQ VRIRNYDPVR LRRFWDTYRQ DTTYNLTHRN 360
  361 CSSSVSRALE AAIEGASARV WGGLGGWRPF LRVISTPELW VAAQVRKRAA TMAWTPGLTL 420
  421 DYARALSMLA DPRPSGWVKM ARLAVQRMVR SRQQWREEAR HAHVAEDTAR DPVRE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	47	0.78
Transmembrane Helix	48	69	0.92
Cytoplasmic	70	75	0.90
Transmembrane Helix	76	94	0.93
Non-Cytoplasmic	95	99	0.80
Transmembrane Helix	100	119	0.94
Cytoplasmic	120	127	0.80
Transmembrane Helix	128	147	0.94
Non-Cytoplasmic	148	155	0.73
Transmembrane Helix	156	175	0.96
Cytoplasmic	176	475	0.97