YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91785740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKTSNQAP KNGHDEHRAE RKASVASTGQ QAAPDEAWDV EQQDNNIVPL TRAEAEKLFG  60
   61 PDVSRPSRVT PFKVVAAQMA LSLGATLVWW LFYKPPGAAA LSAFLGGAIC WVPGALFAAR 120
  121 LRTLSGAETV MSWMIGEALK MGTTIAMFVA IAFWYHDVRW VPLLVTYLIA LKTYWIALAW 180
  181 R

Type	Start	End	Confidence
Cytoplasmic	1	73	0.97
Transmembrane Helix	74	93	0.94
Non-Cytoplasmic	94	98	0.85
Transmembrane Helix	99	119	0.95
Cytoplasmic	120	132	0.81
Transmembrane Helix	133	154	0.88
Non-Cytoplasmic	155	159	0.75
Transmembrane Helix	160	178	0.85
Cytoplasmic	179	181	0.70