YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91689615, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFVGTLVT LLSVFGGYAL EGGHLGALLQ PVEVLMIVGA GIGAFILGNG MKTIKATLRV  60
   61 IPTLFKGAKY NKDVYMELMA LLYVLLAKAR KEGTLTLEAD IDDPSKSPIF TQYPKILADK 120
  121 HIIEFLTDYL RLMVGGNMNA FEIESLMDEE IETHHQEGEA PAHALNKVGD AMPAFGIVAA 180
  181 VMGVVHTMAS ADKPPAVLGE MIAQALVGTF LGILLSYGLI GPLASVAEQR VTESTKMFQC 240
  241 IKVTILASLN GYAPAIAVEF GRKVLFSTER PSFAELEEHV RRVKAK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	25	0.73
Non-Cytoplasmic	26	31	0.61
Transmembrane Helix	32	51	0.88
Cytoplasmic	52	170	0.96
Transmembrane Helix	171	190	0.90
Non-Cytoplasmic	191	200	0.85
Transmembrane Helix	201	224	0.85
Cytoplasmic	225	286	0.61