YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_BURXL
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRTVLWV IFFMSAVMLF DNWQRDHGRP SMFFPSATPT RTVGSAAPGT TTPGTQPADL  60
   61 PATNAAAPGN APAATQSQLI KFNTDVYSGE IDTRGGTLSK LSLVKQGDGK QPDLVITLFD 120
  121 RTANHTYLAR TGLLGGDFPN HNDIYTPLPN QPHDLTGDEK SFQISFESPV KGGVKVIKTY 180
  181 TFTRGSYVIG VDTKIQNVGT TPVSPSVYME LVRDDQPVET PRFSHTFIGP AVYTDQHHFQ 240
  241 KMTFGDIDKN KQDYATSADN GWIAMVQHYF ASAWIPQQGA KRDIYVEKID PALYRVGVKE 300
  301 PVPTIAPGQT VDVSARLFAG PEEERMLEGI APGLELVKDY GWVTIIAKPL FWLLEKIHSY 360
  361 VGNWGWSIVL LTLLIKAVFF PLSAASYKSM ARMKAITPRM QALRERFKGD PQKMNSALME 420
  421 LYKTEKVNPF GGCLPVVIQI PVFISLYWVL LSSVEMRGAP WILWIHDLSQ QDPFFILPVL 480
  481 MAVSMFLQTK LNPTPPDPVQ AKMMMFMPIA FSVMFFFFPA GLVLYYVVNN VLSIAQQYYI 540
  541 TRMMGQAKTK AA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.44
Transmembrane Helix	7	23	0.51
Non-Cytoplasmic	24	361	0.92
Transmembrane Helix	362	384	0.88
Cytoplasmic	385	429	0.92
Transmembrane Helix	430	451	0.91
Non-Cytoplasmic	452	472	0.85
Transmembrane Helix	473	491	0.88
Cytoplasmic	492	504	0.82
Transmembrane Helix	505	528	0.88
Non-Cytoplasmic	529	552	0.89