YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48780704, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRQEIKRY KANLSDELHS AALYETLADA EKDDTRKQVY GDLARSERDH AQVWADKLRA  60
   61 NGLEPKGAGH AVKTRLMKAL VRLFGASFVL PTLAAAEYAD RNKYEGQPDA GRMSADEQHH 120
  121 AAIVRTLAHG GGDTDLSQGA RIAAAEQWHK GVGAGNDLRA AVLGANDGLV SNFCLIMGVA 180
  181 GAGTGNKAIL LTGLAGLIAG ACSMALGEWL SVTNARELAR TQIAKEAQEI KETPEAEEHE 240
  241 LTLIYRAKGL DANEAKRVAS QMMRDPDKAL DTLTREELGL DPAELGGNPW SAAGVSFCLF 300
  301 SLGAIFPVMP FLWTRDYNAI VQCVVLSMLA LASIGVFTSL FNGRSAGFSA LRQIVIGLIA 360
  361 AAFTFGVGRL FGVSVS

Type	Start	End	Confidence
Cytoplasmic	1	161	0.80
Transmembrane Helix	162	182	0.65
Non-Cytoplasmic	183	187	0.56
Transmembrane Helix	188	212	0.83
Cytoplasmic	213	289	0.70
Transmembrane Helix	290	313	0.86
Non-Cytoplasmic	314	318	0.63
Transmembrane Helix	319	341	0.92
Cytoplasmic	342	349	0.62
Transmembrane Helix	350	373	0.87
Non-Cytoplasmic	374	376	0.67