YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94310239, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATSPSART SAADHDALEL QRGQTIKSVY VYEVPVRLWH WINALAITVL CITGYFIGVP  60
   61 LPTMPGEASA NYLMGYIRFA HFAAGYIMAV GLLGRAYWAL VGNHHAKELF WVPVFQKAYW 120
  121 VQAFNMLRWY LFMIPKPNQY VGHNPLARFA MFFVYLMLSV FMVVTGFALY SEGAQAGSWQ 180
  181 DHLFGWVIPL MGQSQDVHTW HRLGMWGIVV FVMLHIYAAI REDIMGRQSI VSTMISGHRT 240
  241 FKE

Type	Start	End	Confidence
Cytoplasmic	1	37	0.65
Transmembrane Helix	38	59	0.90
Non-Cytoplasmic	60	78	0.57
Transmembrane Helix	79	99	0.92
Cytoplasmic	100	148	0.70
Transmembrane Helix	149	170	0.91
Non-Cytoplasmic	171	198	0.87
Transmembrane Helix	199	219	0.93
Cytoplasmic	220	243	0.93