YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93356357, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	26	0.95
Non-Cytoplasmic	27	31	0.86
Transmembrane Helix	32	52	0.93
Cytoplasmic	53	87	0.97
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	116	0.80
Transmembrane Helix	117	138	0.94
Cytoplasmic	139	159	0.88
Transmembrane Helix	160	182	0.94
Non-Cytoplasmic	183	190	0.75
Transmembrane Helix	191	210	0.94
Cytoplasmic	211	220	0.73
Transmembrane Helix	221	240	0.92
Non-Cytoplasmic	241	254	0.94
Transmembrane Helix	255	276	0.93
Cytoplasmic	277	283	0.88
Transmembrane Helix	284	305	0.90
Non-Cytoplasmic	306	324	0.90
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	361	0.90
Transmembrane Helix	362	385	0.91
Non-Cytoplasmic	386	405	0.86
Transmembrane Helix	406	424	0.89
Cytoplasmic	425	433	0.85
Transmembrane Helix	434	454	0.89
Non-Cytoplasmic	455	463	0.81
Transmembrane Helix	464	486	0.88
Cytoplasmic	487	508	0.91
Transmembrane Helix	509	528	0.93
Non-Cytoplasmic	529	544	0.81
Transmembrane Helix	545	566	0.91
Cytoplasmic	567	572	0.92
Transmembrane Helix	573	593	0.93
Non-Cytoplasmic	594	639	0.94
Transmembrane Helix	640	662	0.90
Cytoplasmic	663	691	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIGQHLLW LAVAVLGAFA FATVALSRGE AVSALWIVVA ALCIYLIAYR YYSRFIADKV  60
   61 MQLDPNRMTP AWRHNDGLDY VPTNKAVLFG HHFAAIAGAG PLVGPVLAAQ MGYMPGMLWI 120
  121 LAGVVFAGAV QDFMILFIST RRDGRSLGDL VKSEMGTVPG MIALFGCFMI MIIILAVLAL 180
  181 IVVKALAGSP WGTFTVAVTI PIALFMGIYT RYIRPGRIGE VSVIGFVLLM LAIIGGQYVH 240
  241 ESAVLAPLFT YDGKALTWML IIYGFIAAVL PVWLLLAPRD YLSTFLKIGT IIALAIGILI 300
  301 VAPELKMPAF TQFAQGGGPV WSGNLFPFLF ITIACGAVSG FHALISSGTT PKLLENESHA 360
  361 RFIGYGAMLA ESFVAIMALV AASVIEPGVY FAMNSPAAVI GNTPEAVAHV VSTWGFVITP 420
  421 DVLIQTAKDV GENTIISRAG GAPTLAVGIA HILHQVVGGQ AMMAFWYHFA ILFEALFILT 480
  481 AVDAGTRAGR FMLQDLLGSF VPSLQRTDSL PANLIATALT VAAWGYFLYQ GVVDPLGGIN 540
  541 TLWPLFGISN QMLAAVALVL GTCVLVKMKR GQYAWVTLLP TCWLLICTLT AGWQKLFDAD 600
  601 PKVSFLTHAS KFSAAIAEGK VLAPAKTMEQ MHRIVFNDYL DAGLCALFMF VVLSIVFYGF 660
  661 KTAMSARAIS KRTDRETPFE PMPAQASAAS H