YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68555597, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFNRRNKR VNNGNVTHLR PFRRNQLRND NAYDPDEHDL EYVRPRRRGI YLLPNAFTTA  60
   61 ALFAGFFAIV QAMNMRFDVA AIAIFAAMVL DGMDGRVARI TNTQSAFGEQ YDSLSDMTSF 120
  121 GVAPALVMYE WILHDLGKWG WIAAFVYCTC AALRLARFNA NIGVVDKRFF QGLPSPAAAA 180
  181 LVAGFVWLAI DNKLPVKELW MPWVAFGITL YAGLSMVSNA PFYSGKALDV RYRVPFGMMV 240
  241 LVLVLFVVVS SDPPVALFGL FVAYAISGYL LWAWRTLHGQ RGGVDKSRAP GNGSGGN

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	70	0.94
Non-Cytoplasmic	71	78	0.72
Transmembrane Helix	79	98	0.74
Cytoplasmic	99	113	0.72
Transmembrane Helix	114	133	0.75
Non-Cytoplasmic	134	138	0.84
Transmembrane Helix	139	158	0.93
Cytoplasmic	159	168	0.92
Transmembrane Helix	169	190	0.94
Non-Cytoplasmic	191	198	0.94
Transmembrane Helix	199	223	0.85
Cytoplasmic	224	229	0.93
Transmembrane Helix	230	249	0.91
Non-Cytoplasmic	250	254	0.79
Transmembrane Helix	255	274	0.92
Cytoplasmic	275	297	0.91