YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93353067, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.95
Transmembrane Helix	36	54	0.93
Non-Cytoplasmic	55	60	0.71
Transmembrane Helix	61	82	0.94
Cytoplasmic	83	102	0.95
Transmembrane Helix	103	124	0.94
Non-Cytoplasmic	125	129	0.87
Transmembrane Helix	130	150	0.93
Cytoplasmic	151	157	0.87
Transmembrane Helix	158	177	0.94
Non-Cytoplasmic	178	183	0.84
Transmembrane Helix	184	205	0.94
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.95
Non-Cytoplasmic	247	252	0.75
Transmembrane Helix	253	273	0.93
Cytoplasmic	274	287	0.85
Transmembrane Helix	288	306	0.94
Non-Cytoplasmic	307	312	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKMPPVVT ATHSQSSVGR LRHLARQYAA LTKPRVTQLA VFCAIIGMFL ATPGMVPWSV  60
   61 LIGGAAGIWL LAGAAFAINC LVEQKIDALM RRTAWRPSAT GEITTTQTLI FSAVLGGAGM 120
  121 WLLHVFANDL TMWLTFATFL GYAVVYTILL KPATPQNIVI GGLSGAMPPA LGWSAVSGTV 180
  181 PAEAWFLVLI IFTWTPPHFW ALALYRRADY AKSGLPMLPI THGERYTLLH ILLYTLIMIA 240
  241 ATLLPFVYGM SGYIYLVAAL GLGLVFLGYA WKLYRNYSDG LAQRTFRYSI LYLSLLFAVL 300
  301 LVDHYFKFVP QV