YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68556909, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLLMLLLG VDYLRTRWKA LAWAGALSIV VGAVLFIDAL DGKLDFPIQP FAWLLLLEGL  60
   61 ATLAVASTGI GGQRTLRYAK GIAFSVAAIL VLAERHHGHM VLSVIFGALF LADGLLQVAS 120
  121 AHVVRFRTWR LAMAGGVIEI ALAIFFIQPY PTHYVGTVPY CVALGLIFGG WNMLLLASRA 180
  181 RRLAGNPGLR KDPESASAES NKRRLTTWSG PPASDERALT VHVWTPVGSA KSKAQHQPII 240
  241 DRYIAAVDRD GVISTGHAAL ESPEGIYISL YPAVEIDRSP DDFTRLLRAT QENNVPGRFQ 300
  301 PDYPTESKAW CASTVQVRIR NYDAERLQNF WHDYRQNTTY NLTYRNCSST VARALDAALE 360
  361 GAATRAWTRL GGWWPLFRLL LTPELWVAAH LRKRAATMAW TPGLTLDYAR AMSMLADPRP 420
  421 FAWATVWSGL AARRSGRESR

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	49	0.82
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	75	0.86
Transmembrane Helix	76	93	0.90
Non-Cytoplasmic	94	99	0.66
Transmembrane Helix	100	119	0.91
Cytoplasmic	120	128	0.71
Transmembrane Helix	129	147	0.95
Non-Cytoplasmic	148	155	0.72
Transmembrane Helix	156	175	0.95
Cytoplasmic	176	440	0.88