YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48770095, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVTTAQMY GWIATFLWPM FRMLGLISSA PLLSESTIPR RLKILLAAAL SIIISPTIGN  60
   61 IPTVPVYSLD GLLIVLNEVG IGLSMGFAMR LVFAAVQMAG EVIGLQMGLS FASFYDRAAG 120
  121 GQTMVLSRFL NMVAMLLFLA LDGHLMMLAA LIDSFQGLPI SGVPLSGHGW GVLARAGSMI 180
  181 FSAGTLLSLP MIAALLTMNL AMGILNRASP QLSIFAVGFP VTLLGGMLVL ALVMPHMGAY 240
  241 VQHLIESGLQ TAATVLDQLA P

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.79
Transmembrane Helix	12	33	0.82
Cytoplasmic	34	43	0.82
Transmembrane Helix	44	64	0.92
Non-Cytoplasmic	65	86	0.73
Transmembrane Helix	87	109	0.73
Cytoplasmic	110	128	0.75
Transmembrane Helix	129	152	0.84
Non-Cytoplasmic	153	175	0.77
Transmembrane Helix	176	200	0.83
Cytoplasmic	201	211	0.75
Transmembrane Helix	212	234	0.90
Non-Cytoplasmic	235	261	0.80