YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68529001, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLRADVAR HPARLPRVAA TLLALLPLVL WLAPESALAQ SLPGVTSRPG PGGGQTWSLS  60
   61 IQTLVLLTSL SFLPAAMLMM TGFTRIIIVL GLLRNALGTA SSPPNQVLVG LSLFLTFFVM 120
  121 SPVFDKVYTD AYQPLSENKI SLETAAQRAA VPLRAFMLRQ TREKDLAMFA QMAKTPELQG 180
  181 PEDVPFTVLV PAFVTSELKT AFQIGFTIFI PFLIIDLVVA SVLMAMGMMM VPPATISLPF 240
  241 KLMLFVLVDG WQLLLGSLAQ SFMN

Type	Start	End	Confidence
Signal Peptide	1	39	0.84
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	63	0.90
Transmembrane Helix	64	88	0.80
Cytoplasmic	89	104	0.72
Transmembrane Helix	105	124	0.76
Non-Cytoplasmic	125	203	0.81
Transmembrane Helix	204	228	0.83
Cytoplasmic	229	237	0.62
Transmembrane Helix	238	259	0.81
Non-Cytoplasmic	260	264	0.60