YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68525801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFALILFVL VVITGIAWVA DKLVFERQRR SVAQLALAEF DARRNDMQSM QGGADIDRSR  60
   61 ARLAEEKLRQ PWWLEYSASF FPVILAVFVL RSFVVEPFKI PSGSMIPTLL IGDFILVNKY 120
  121 DYGIRLPVVN KKIISLGEPQ RGDVMVFRYP RDESLDYIKR VIGVPGDVVQ YENKKLTING 180
  181 KPAEYSPLPD YLDEERLAYS KHFVEQLPGG PQHGILNDND RPAFVAGADP DFPFRDNCTY 240
  241 NQQGVTCKVP EGHYFVMGDN RDNSLDSRYW GFVPDQNIVG KAFLIWMNLG NFGRVGSFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.62
Transmembrane Helix	5	25	0.65
Cytoplasmic	26	71	0.69
Transmembrane Helix	72	90	0.68
Non-Cytoplasmic	91	299	0.75