YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83577920, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLDHLEEA LIAFLMAAAT LIIFVAVVHR YASGVAFLYP YVGHLHFAWA QELCIILFVW  60
   61 MAKFGAAYGV RTGIHVGVDV VINRLKPRAR GVFIVFGLLA GAAFTGCVAV LGGSFVWDNG 120
  121 AHYAFVTALG LEIGDLYEGP ITADLEWPTW IVYSAIPLGS SLMCFRFLQV CVGFLRTGEL 180
  181 PHHDHGHVEG LDEDKTDAQR AAQDINWFTM NDGLHPKDIA HDDDTGDKPD DGTGTGKGDG 240
  241 R

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	32	0.91
Non-Cytoplasmic	33	46	0.83
Transmembrane Helix	47	67	0.85
Cytoplasmic	68	91	0.89
Transmembrane Helix	92	115	0.93
Non-Cytoplasmic	116	148	0.94
Transmembrane Helix	149	170	0.88
Cytoplasmic	171	241	0.95