YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83576020, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPADATRDE DSDLEDKKMP LIDHLIELRS RLLWSTVFFL VAFFACFAYA QEIYNILVLP  60
   61 LARVMERVGG SQRMIYTALT EAFFTYVKVG AFGAIVLSFP LIATQIWMFV APGLYRHEKR 120
  121 AFLPFLIVSP MLFILGAAMV YYLVMPMAWS FLLGFQTTRE QTVLPIQLEA KVGEYLGLVM 180
  181 KLILAFGFSF QMPVALTLMA RVGLVTSRGL AKARKYAIVA VFAGAAVITP PDIMSQVMLA 240
  241 IPLLVLYELS IVAARMVEKS KGIEDDDLEN LDDDEPPPAA AAPSTAHKRG GTTALAAPLA 300
  301 RDEEAGADGD PGRFEETDWN HGH

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	51	0.95
Non-Cytoplasmic	52	88	0.91
Transmembrane Helix	89	111	0.87
Cytoplasmic	112	121	0.89
Transmembrane Helix	122	145	0.92
Non-Cytoplasmic	146	181	0.95
Transmembrane Helix	182	205	0.87
Cytoplasmic	206	215	0.80
Transmembrane Helix	216	234	0.82
Non-Cytoplasmic	235	236	0.55
Transmembrane Helix	237	254	0.57
Cytoplasmic	255	323	0.59