YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48763001
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAVEIAVIV LLMLLNGLFA MSELAMVSSR RARLQAMADR HVPGARIALR LTEDPGRFLS  60
   61 TVQIGITLVG VVAGAYGGAT LGDRAGECLE TIPALAGWGR FLGVGGVLLL ITFLSIVLGE 120
  121 LIPKRIALTN PERTACVVAG LMRALSRIAA PFVWLLAAST EMALRLLGIH GSEGTTVTEE 180
  181 EVRALISEGT EAGVFAPEEQ EMIRGVLRLG DRTVRAVMTP RPEVVWLDLE EPTQALLLQI 240
  241 GSGSHSSYPV CRGQLDEIVG IVHTRDLLAA AVRGKPLNLE AAMVRPLVVH DGMAILRLLD 300
  301 LMKANRSYLA VVVDEYGSVE GVVTLTDILE SIAGDLPDAD EDSEVAAVPR ADGSWLVEGW 360
  361 MPIDEFEDTL HLRDLRDGDD FQTVAGLVLR ELGRIPSAGD VFERDGIRFE VVDMDRRRID 420
  421 KILVTPLPSS QAEGDI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.93
Transmembrane Helix	6	27	0.92
Cytoplasmic	28	57	0.93
Transmembrane Helix	58	79	0.91
Non-Cytoplasmic	80	97	0.89
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	138	0.82
Transmembrane Helix	139	158	0.71
Non-Cytoplasmic	159	436	0.89