YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48731533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLELFAAA LGVIAVWLTV KQNPWCWPIG LVMVSLYAWV FFEVKLYSDM LLQVVYAGLQ  60
   61 IYGWWQWTRA GTMHDGREVS RLDNRSIAQG LAIGAVGSLL LGAAMAHWTD AAQPWLDAAL 120
  121 TGFSLVAQFW MAHKRLQCWA LWFVLDVIFV GLFLYKGLYL TAALYALFTL IAVQGWREWR 180
  181 ADPALQR

Type	Start	End	Confidence
Cytoplasmic	1	23	0.66
Transmembrane Helix	24	41	0.79
Non-Cytoplasmic	42	49	0.65
Transmembrane Helix	50	68	0.86
Cytoplasmic	69	86	0.93
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	113	0.77
Transmembrane Helix	114	132	0.85
Cytoplasmic	133	138	0.77
Transmembrane Helix	139	173	0.76
Non-Cytoplasmic	174	187	0.41