YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48730903, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRNSSSRY GWVSIFMHWG VALAVFGLFA LGLWMVGLDY YSTWRKDAPD LHKSIGLVLL  60
   61 AVMVLRVLWR FVSPPPPTLQ SYSRMTRIGA KFGHGFLYLA LFAVMIAGYL ISTADGVGIP 120
  121 VFGLFEVPAL VSGLPDQADT AGVIHLYLAW ALVIFSGLHA LAALKHHFID RDATLTRMLG 180
  181 RKA

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	50	0.91
Transmembrane Helix	51	72	0.88
Cytoplasmic	73	91	0.93
Transmembrane Helix	92	113	0.92
Non-Cytoplasmic	114	142	0.91
Transmembrane Helix	143	164	0.89
Cytoplasmic	165	183	0.87