YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP2_PSEPF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLTLFKVL ILGAVEGLTE FLPISSTGHQ IIVADLLEFG GERAMAFNII IQLGAILAVV  60
   61 WEFRPKIFEI VKGLPTQSNA QRFTRNLLIA FFPAVILGVL FADTIHEYLF NPITVAVALV 120
  121 VGGIVMLWAE QRDHVVSVDH VDDMKWADAL KIGCVQCLAM IPGTSRSGST IIGGLLFGLS 180
  181 RKAATEFSFF LAMPTMVGAA VYSGYKYREL FQSSDLPVFA LGFVVAFIFA MIAVRGLLKF 240
  241 IANHSYATFA WYRIAFGLLI LATWQFGWVN WTAAAAA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.72
Transmembrane Helix	9	27	0.76
Non-Cytoplasmic	28	43	0.76
Transmembrane Helix	44	63	0.93
Cytoplasmic	64	82	0.93
Transmembrane Helix	83	102	0.95
Non-Cytoplasmic	103	108	0.77
Transmembrane Helix	109	129	0.92
Cytoplasmic	130	186	0.80
Transmembrane Helix	187	205	0.89
Non-Cytoplasmic	206	215	0.72
Transmembrane Helix	216	238	0.90
Cytoplasmic	239	248	0.71
Transmembrane Helix	249	268	0.94
Non-Cytoplasmic	269	277	0.68