YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77381874, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVALLSAAA VALDALLGEP KRWHPLVAFG NFAGRIEQRF NSAGRGWRSH GVTAWVIAVL  60
   61 PLTLLATAFS WAPYVGWIVE ILALYCALGM RSLGEHVEPV AKALRADDLE EARKRVGYLV 120
  121 SRQTDELDST AVARAATESV LENGSDAVFA ALFWFAVAGA PGVVLYRLSN TLDAMWGYRN 180
  181 ERFERFGWAA AKIDDVLNYI PARLVALTYA LLGKTRLALK CWRTQAPKWD SPNAGPVMAA 240
  241 GAGALGVELG GPAIYHGELH ERPQLGEGAP ADADSIDRGW QLVQRGVWLW LLILCVGAEF 300
  301 YA

Type	Start	End	Confidence
Cytoplasmic	1	50	0.85
Transmembrane Helix	51	72	0.85
Non-Cytoplasmic	73	146	0.70
Transmembrane Helix	147	169	0.85
Cytoplasmic	170	285	0.67
Transmembrane Helix	286	301	0.51
Non-Cytoplasmic	302	302	0.49