YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48729140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	36	0.94
Non-Cytoplasmic	37	56	0.88
Transmembrane Helix	57	79	0.91
Cytoplasmic	80	93	0.91
Transmembrane Helix	94	115	0.93
Non-Cytoplasmic	116	147	0.93
Transmembrane Helix	148	167	0.95
Cytoplasmic	168	188	0.90
Transmembrane Helix	189	209	0.91
Non-Cytoplasmic	210	232	0.81
Transmembrane Helix	233	254	0.92
Cytoplasmic	255	263	0.86
Transmembrane Helix	264	285	0.89
Non-Cytoplasmic	286	322	0.95
Transmembrane Helix	323	342	0.92
Cytoplasmic	343	350	0.87
Transmembrane Helix	351	370	0.95
Non-Cytoplasmic	371	381	0.75
Transmembrane Helix	382	402	0.55
Cytoplasmic	403	409	0.51
Transmembrane Helix	410	434	0.84
Non-Cytoplasmic	435	451	0.56
Transmembrane Helix	452	473	0.89
Cytoplasmic	474	478	0.53
Transmembrane Helix	479	503	0.83
Non-Cytoplasmic	504	666	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASSTPASG LVRMNPPVFW FAATVILLFG LTVIAMPEQA GAWLLEAQNW AANTVGWYYM  60
   61 LAMTLYLVFV VVTALSGYGK IKLGADHDEP EFSYLSWAGM LFAAGISITL FFFCVSEPLT 120
  121 HMLQPPQGEA GTPEAARQAM QILFLHWGLH GWGVFAFVGM ALAYFAYRHN LPLALRSALY 180
  181 PLIGKRINGP IGYAVDGFGI IATVFGLGAD MGFGVLHLNS GLDYLFGIAH TQWIQVGLIT 240
  241 LMMGAAIIVA VSGVDKGVRV MSDINMLLAC ALLLFVLFAG PTQHLLNTLI QNLGDYLGAL 300
  301 PMKSFDLYAY DKPSDWLGGW TVFYWAWWIA WSPFVGLFIA RISRGRTIRE FVFGVLLIPL 360
  361 GFTLAWMSIF GNSAIDQVLN HGMSALGMSA LDNPSMTLYL LLETYPWSKT VIAVTVFISF 420
  421 VFFVTSADSG TVVLSTLSAK GGNPDEDGPK WLRVFWGAMT ALVTSALLFS GSIDALKSAV 480
  481 VLTSLPFSLI LLLMMWGLHK AFYLESQKQI AQLHSLAPVS GSRRGKGGWR QRLSQAVHFP 540
  541 SRDEVYRFMD TTVKPAIEEV TAVFAEKGLN VVTQPDPAHD SVSLEIGHGE QHPFIYQVQM 600
  601 RGYFTPSFAR GGMGSKQLNN RRYYRAEVHL SEGSQDYDLV GYTKEQIIND ILDQYERHMQ 660
  661 FLHLVR