YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48729092, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLVDHLSQ YAAYHRDPRN IASHFIGIPL IVVAVAVLLS RPEWSVGGLW ISPAVIAALA  60
   61 SAWFYLRLEL KLGALMTVLM GLSVWAGHVL AQQSTMVWLS SGLAMFVIGW AIQFVGHHYE 120
  121 GRKPAFVDDL SGLIVGPLFV VAELAFMLGM RHELKEQIEA RAGVVRVNPN RAAV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	45	0.84
Transmembrane Helix	46	66	0.91
Cytoplasmic	67	71	0.80
Transmembrane Helix	72	91	0.83
Non-Cytoplasmic	92	96	0.65
Transmembrane Helix	97	117	0.88
Cytoplasmic	118	129	0.60
Transmembrane Helix	130	149	0.82
Non-Cytoplasmic	150	174	0.65