YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77461113, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLPLIWA VIIIFGIMMY VVMDGFDLGI GILFPFIPGK TDRDVMMNTV APVWDGNETW  60
   61 LVLGGAALFG AFPLAYSVVL SALYLPLIFM LIGLIFRGVA FEFRFKAKDD KRHLWDKAFI 120
  121 GGSIAATFFQ GVALGAFIDG LPVVNRQYAG GSLDWLTPFT LFCGAALVVA YALLGCTWLI 180
  181 MKTEGKLQEQ MHDLARPLAF VLLAVIGVVS LWTPLAHPEI ATRWFSMPNL FWFMPVPILV 240
  241 LVTMYGLIRA VARNANYMPF LLTLVLIFLG YSGLGISLWP NIVPPSISIW DAAAPPQSQG 300
  301 FMLVGTLFII PFILGYTFWS YYVFRGKVTH EDGYH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	30	0.85
Non-Cytoplasmic	31	66	0.55
Transmembrane Helix	67	101	0.76
Cytoplasmic	102	117	0.89
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	157	0.88
Transmembrane Helix	158	180	0.93
Cytoplasmic	181	193	0.95
Transmembrane Helix	194	216	0.87
Non-Cytoplasmic	217	229	0.85
Transmembrane Helix	230	248	0.95
Cytoplasmic	249	259	0.73
Transmembrane Helix	260	280	0.94
Non-Cytoplasmic	281	299	0.91
Transmembrane Helix	300	320	0.94
Cytoplasmic	321	335	0.89