YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77461042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKAAKISV YAWEGTDRKG SKVTGELSGQ NPALVKAQLR KQGINPGKVR KKSASLLSFG  60
   61 KRIKAQDIAL FTRQMATMMK AGVPLLQSFD IIGEGFENPA MRKLVDEVKQ EVAAGNSFAA 120
  121 ALRKKPQYFD ELYCNLVDAG EQSGALDTLL ERVATYKEKS ESLKAKIKKA MTYPSAVVLV 180
  181 AAVVTGILLV KVVPQFQSVF SGFGAELPAF TLMVISLSEF MQQWWWAILG LLVASFFGTR 240
  241 HALKKSQALR DRRDAWFLKL PLVGTLMYKS AVARFARTLS TTFAAGVPLV EALDSVAGAT 300
  301 GNVVFKRAVL RIRQDVSTGM QLNFSMRSTG IFPNMAVQMT AIGEESGALD EMLDKVAGFY 360
  361 EDEVDNMVDN LTSLMEPFIM VVLGVIVGGL VVAMYLPIFQ LGSAI

Type	Start	End	Confidence
Cytoplasmic	1	171	0.96
Transmembrane Helix	172	193	0.91
Non-Cytoplasmic	194	222	0.91
Transmembrane Helix	223	243	0.93
Cytoplasmic	244	254	0.98
Transmembrane Helix	255	276	0.50
Non-Cytoplasmic	277	282	0.47
Transmembrane Helix	283	304	0.46
Cytoplasmic	305	376	0.66
Transmembrane Helix	377	399	0.91
Non-Cytoplasmic	400	405	0.55