YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2564952, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.33
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELWPGAWTA LLLLLLLLLS TLWFCSSSAK YFFKMAFYNG WILFLAILAI PVCAVRGRNV  60
   61 ENMKILRLLL LHVKYLYGIR VEVRGAHHFP PTQPYVVVSN HQSSLDLLGM MEVLPDRCVP 120
  121 IAKRELLWAG SAGLACWLAG IIFIDRKRTG DAISVMSEVA QTLLTQDVRV WVFPEGTRNH 180
  181 NGSMLPFKRG AFHLAVQAQV PIIPIVMSSY QDFYSKKERR FTSPGRCQVR VLPPVSTEGL 240
  241 TPDDVPALAD SVRHSMLTIF REISTDGLGG GDCLKKPGGA GEARL

Type	Start	End	Confidence
Signal Peptide	1	29	0.69
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	41	0.82
Transmembrane Helix	42	60	0.52
Cytoplasmic	61	125	0.53
Transmembrane Helix	126	144	0.51
Non-Cytoplasmic	145	285	0.71