YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153792186, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLQLLG FSMALLGWVG LVACTAIPQW QMSSYAGDNI ITAQAMYKGL WMDCVTQSTG  60
   61 MMSCKMYDSV LALSAALQAT RALMVVSLVL GFLAMFVATM GMKCTRCGGD DKVKKARIAM 120
  121 GGGIIFIVAG LAALVACSWY GHQIVTDFYN PLIPTNIKYE FGPAIFIGWA GSALVILGGA 180
  181 LLSCSCPGNE SKAGYRVPRS YPKSNSSKEY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	30	0.87
Non-Cytoplasmic	31	78	0.94
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	117	0.92
Transmembrane Helix	118	142	0.88
Non-Cytoplasmic	143	164	0.90
Transmembrane Helix	165	186	0.92
Cytoplasmic	187	211	0.97