YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34785219, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQSARRAV LQLLGTTAPA DVPALLHWMR TTRDFDEFTH DNNDIMLKNI ADDLRKCLPV  60
   61 EAVLCSEHLA LQKIRQQPEP TVHVDAFLYD EDFIDTLCEE GKMSRNYCTV CGSHRTAPLG 120
  121 FISHSFSLTE LKFIYHHVLP DLSGKVLVDV GSRLGTVLYG GYLYSSAVQL CGVELNGQFC 180
  181 QLQEMIIKKY QFGDRIKVLH ADICTQSSLL QTADVIVMNN VFEYFLTEAQ QASAWNYIIH 240
  241 NVRKQGSLLV TVPSLQESLM GLQINVQLSS WVEEIPLSLD VYSQRDIDQE ALQQIHLYKV 300
  301 L

Type	Start	End	Confidence
Signal Peptide	1	20	0.69
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	301	0.99