YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.94
Transmembrane Helix	70	85	0.91
Non-Cytoplasmic	86	98	0.77
Transmembrane Helix	99	123	0.80
Cytoplasmic	124	146	0.89
Transmembrane Helix	147	167	0.80
Non-Cytoplasmic	168	179	0.66
Transmembrane Helix	180	199	0.93
Cytoplasmic	200	208	0.80
Transmembrane Helix	209	228	0.93
Non-Cytoplasmic	229	255	0.86
Transmembrane Helix	256	276	0.83
Cytoplasmic	277	294	0.95
Transmembrane Helix	295	317	0.90
Non-Cytoplasmic	318	370	0.90
Transmembrane Helix	371	392	0.81
Cytoplasmic	393	411	0.89
Transmembrane Helix	412	430	0.95
Non-Cytoplasmic	431	444	0.84
Transmembrane Helix	445	466	0.85
Cytoplasmic	467	473	0.89
Transmembrane Helix	474	497	0.90
Non-Cytoplasmic	498	504	0.84
Transmembrane Helix	505	527	0.87
Cytoplasmic	528	568	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLDPKEKMP DDGASGDHGD SASLGAINPA YSNSSLPHST GDSEEPFTTY FDEKIPIPEE  60
   61 EYSCFSFRKL WAFTGPGFLM SIAYLDPGNI ESDLQSGAVA GFKLLWVLLL ATIVGLLLQR 120
  121 LAARLGVVTG LHLAEVCHRQ YPKVPRIILW LMVELAIIGS DMQEVIGSAI AINLLSAGRV 180
  181 PLWGGVLITI ADTFVFLFLD KYGLRKLEAF FGFLITIMAL TFGYEYITVK PSQSQVLRGM 240
  241 FVPSCPGCRT PQVEQAVGIV GAVIMPHNMY LHSALVKSRQ VNRANKQEVR EANKYFFIES 300
  301 CIALFVSFII NVFVVSVFAE AFFEKTNKQV VEVCKNNSSP HADLFPSDNS TLAVDIYKGG 360
  361 VVLGCYFGPA ALYIWAVGIL AAGQSSTMTG TYSGQFVMEG FLNLKWSRFA RVILTRSIAI 420
  421 IPTLLVAVFQ DVEHLTGMND FLNVLQSLQL PFALIPILTF TSLRPVMSEF SNGIGWRIAG 480
  481 GILVLIVCSI NMYFVVVYVQ ELGHVALYVV AAVVSVAYLT FVFYLGWQCL IALGLSFLDC 540
  541 GRSYRLGLTA QPELYLLNTV DADSVVSR