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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|10440043
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSPGSRKSP NFNIHPLYQH VLLYLQLYDS SRTLYAFSAI KAILKTNPIA FVNAISTTSV  60
   61 NNAYTPQLSL LQNLLARHRI SVMGKDFYSH IPVDSNHNFR SSMYIEILIS LCLYYMRSHY 120
  121 PTHVKVTAQD LIGNRNMQMM SIEILTLLFT ELAKVIESSA KGFPSFISDM LSKCKVQKVI 180
  181 LHCLLSSIFS AQKWHSEKMA GKNLVAVEEG FSEDSLINFS EDEFDNGSTL QSQLLKVLQR 240
  241 LIVLEHRVMT IPEENETGFD FVVSDLEHIS PHQPMTSLQY LHAQPITCQG MFLCAVIRAL 300
  301 HQHCACKMHP QWIGLITSTL PYMGKVLQRV VVSVTLQLCR NLDNLIQQYK YETGLSDSRP 360
  361 LWMASIIPPD MILTLLEGIT AIIHYCLLDP TTQYHQLLVS VDQKHLFEAR SGILSILHMI 420
  421 MSSVTLLWSI LHQADSSEKM TIAASASLTT INLGATKNLR QQILELLGPI SMNHGVHFMA 480
  481 AIAFVWNERR QNKTTTRTKV IPAASEEQLL LVELVRSISV MRAETVIQTV KEVLKQPPAI 540
  541 AKDKKHLSLE VCMLQFFYAY IQRIPVPNLV DSWASLLILL KDSIQLSLPA PGQFLILGVL 600
  601 NEFIMKNPSL ENKKDQRDLQ DVTHKIVDAI GAIAGSSLEQ TTWLRRNLEV KPSPKIMVDG 660
  661 TNLESDVEDM LSPAMETANI TPSVYSVHAL TLLSEVLAHL LDMVFYSDEK ERVIPLLVNI 720
  721 MHYVVPYLRN HSAHNAPSYR ACVQLLSSLS GYQYTRRAWK KEAFDLFMDP SFFQMDASCV 780
  781 NHWRAIMDNL MTHDKTTFRD LMTRVAVAQS SSLNLFANRD VELEQRAMLL KRLAFAIFSS 840
  841 EIDQYQKYLP DIQERLVESL RLPQVPTLHS QVFLFFRVLL LRMSPQHLTS LWPTMITELV 900
  901 QVFLLMEQEL TADEDISRTS GPSVAGLETT YTGGNGFSTS YNSQRWLNLY LSACKFLDLA 960
  961 LALPSENLPQ FQMYRWAFIP EASDDSGLEV RRQGIHQREF KPYVVRLAKL LRKRAKKNPE1020
 1021 EDNSGRTLGW EPGHLLLTIC TVRSMEQLLP FFNVLSQVFN SKVTSRCGGH SGSPILYSNA1080
 1081 FPNKDMKLEN HKPCSSKARQ KIEEMVEKDF LEGMIKT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle