YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17883-PA
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKNEQRPLN FEKCPESDDE LKKRLEIEKL INKNIDKNIS FDVLVKLSLA PYGLVNDDFR  60
   61 RILWPQLAGV DINHLGQAPT LDKFQCHPEY NQVVLDVNRS LKRFPPGIPY EQRIALQDQL 120
  121 TVLILRVIQK YPNLRYYQGY HDVAVTFLLV VGEEIAFAIM EQLSTTHFSE CMQETMEATQ 180
  181 RRLMFIWPII KFENPELYQF LQNSTVGTLF SLPWYLTWFG HSLTSYRTVV RLYDYFLASP 240
  241 IYTSIFVTAA ILLYRSDEIL KEDCDMASVH CLLSVIPEDL PFEDLLKTSS SLLNKYSLTL 300
  301 IEKDVEELIC QERRKRKTDE ALIVKRRQPA TSNRIPIITK WLPNILTAKP VILTTAISIV 360
  361 VGVCAYYYNN QYLAAGIS

Type	Start	End	Confidence
Cytoplasmic	1	199	0.71
Transmembrane Helix	200	218	0.65
Non-Cytoplasmic	219	234	0.67
Transmembrane Helix	235	254	0.72
Cytoplasmic	255	345	0.79
Transmembrane Helix	346	368	0.74
Non-Cytoplasmic	369	378	0.80