YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12721668, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLSVAMIV KNEAEHLAQC LDTVKDWVDD IVILDSGSTD NTKEIALSYG AKFYAHCEWP  60
   61 GFGRQRQIAQ QYVTTDYVLW LDADERVTPE LRESIQRAVA KNEKNVVYKI SRLSEVFGRK 120
  121 IRHSNWYPDF VLRLYPTALT QYNDEPVHEK VMVPSHAKVE KLAGDLEHYT YKDMHHYLVK 180
  181 SAGYAKAWAE KREKAGKKGS LLAAFTHAIG CFAKMYIFNA GFLDGKQGLL LAVLSAHSTF 240
  241 VKYADLWVRT QTKK

Type	Start	End	Confidence
Cytoplasmic	1	198	0.72
Transmembrane Helix	199	218	0.68
Non-Cytoplasmic	219	227	0.81
Transmembrane Helix	228	246	0.54
Cytoplasmic	247	254	0.53