YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17861638
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTASQSNC WLLQRRQLDS ITTVLAEMIA TAMLMFLGCM GSVENSVFTN SDFQSALNFG  60
   61 FVVLICIQCF GCVCGAHLNP AVTLATYVYN MISLPMALAY FVAQMVGAFI GYGLLKAVLP 120
  121 ESAIYSAENP NGVCLTSLNS TLTPWQGLAV EFLITCVLIS VCCGVWDPRN ATKQDSLPVR 180
  181 FGLAIACLSL TAGQLTGASM NPVRSFAPAI WNGFWDDHWI YWVGPMAAAL ITSVIYKHAF 240
  241 RRELEESEVD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	55	0.88
Transmembrane Helix	56	78	0.89
Cytoplasmic	79	87	0.74
Transmembrane Helix	88	112	0.78
Non-Cytoplasmic	113	146	0.91
Transmembrane Helix	147	166	0.96
Cytoplasmic	167	176	0.89
Transmembrane Helix	177	198	0.92
Non-Cytoplasmic	199	217	0.95
Transmembrane Helix	218	240	0.88
Cytoplasmic	241	250	0.99