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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20152123
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIREAVFLV LTLLPGMILG TRYNQLHLYA NGGASSSGPG GYRPAPSSQN EVYSIADSQP  60
   61 MTEDGYMPPS QHFPPTHSDL DPPAQQQSTC QTVCACKWKG GKQTVECIDR HLIQIPEHID 120
  121 PNTQVLDMSG NKLQTLSNEQ FIRANLLNLQ KLYLRNCKIG EIERETFKGL TNLVELDLSH 180
  181 NLLVTVPSLA LGHIPSLREL TLASNHIHKI ESQAFGNTPS LHKLDLSHCD IQTISAQAFG 240
  241 GLQGLTLLRL NGNKLSELLP KTIETLSRLH GIELHDNPWL CDCRLRDTKL WLMKRNIPYP 300
  301 VAPVCSGGPE RIIDRSFADL HVDEFACRPE MLPISHYVEA AMGENASITC RARAVPAANI 360
  361 NWYWNGRLLA NNSAFTAYQR IHMLEQVEGG FEKRSKLVLT NAQETDSSEF YCVAENRAGM 420
  421 AEANFTLHVS MRAAGMASLG SGQIVGLSAA LVALIVFALG VIMCLLLRVK RQPYVDSKTP 480
  481 NHMEVITSVN HQNSITNKTQ PATGNGSIGG VVIANGAVAN IIDGGVVQGG TLERKSSGRG 540
  541 GVPHGVHDQR SANPVQKPPR LTDLPYSTQG YDNNGSVLST ASCFISPSGS TGNGGNNPDL 600
  601 INDTKRFGSD EFADLKIPPI SGVGVGGSGE YSRANGCDSL YPSGLWEHGA PVGTTSADDL 660
  661 FMKRYTDKTP IIDSTQLYDL HERTAATDYF SKTFPRSHLQ QGMMTGGGGG TSTASTVTTN 720
  721 LSGGSSSGYP NDYGLPLVPG AEHQHNHQLQ MHPLQQLQQQ LTSTLNHQKQ EGSSTGSSPH 780
  781 FSSRTLPRLH EGSGGGGSSR KERRGNQTKN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle