YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20151389
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAHLALAF FVINFMGMLL NIRSFGRDYL VPNTIAMGFS EIIGCFLALH FTLKHNKWKW  60
   61 QCAGVFNILA GILGCMGWIF TNADSMDADL KVSLWMIIAT IPKAAVSCAQ SMILACMNEL 120
  121 MPANKKQLFV FSVVTWARVW LLSAPFFNVL RKIDTAMSLT SYCVFSILGG ICTSLLLTPR 180
  181 LSVSPVVPHL EQRNTKEQSP LNAPVWTVES DVNNTRL

Type	Start	End	Confidence
Cytoplasmic	1	5	0.75
Transmembrane Helix	6	25	0.90
Non-Cytoplasmic	26	33	0.61
Transmembrane Helix	34	53	0.94
Cytoplasmic	54	61	0.72
Transmembrane Helix	62	81	0.95
Non-Cytoplasmic	82	93	0.72
Transmembrane Helix	94	116	0.83
Cytoplasmic	117	127	0.69
Transmembrane Helix	128	149	0.85
Non-Cytoplasmic	150	157	0.60
Transmembrane Helix	158	178	0.91
Cytoplasmic	179	217	0.73