YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|313814
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAMMVKLGA NKSALLLKPS AFSRAAALSS SRRLLFNTAR TNFLSTSPLK NVASEMNTKA  60
   61 AIAEEQILNK QRAKRPISPH LTIYQPQLTW YLSSLHRISL VLMGLGFYLF TILFGVSGLL 120
  121 GLGLTTEKVS NWYHQKFSKI TEWSIKGSFA YLFAIHYGGA IRHLIWDTAK ELTLKGVYRT 180
  181 GYALIGFTAV LGTYLLTL

Type	Start	End	Confidence
Cytoplasmic	1	99	0.89
Transmembrane Helix	100	124	0.87
Non-Cytoplasmic	125	146	0.80
Transmembrane Helix	147	166	0.90
Cytoplasmic	167	175	0.86
Transmembrane Helix	176	196	0.91
Non-Cytoplasmic	197	198	0.70