YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACOD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHMLQEIS SSYTTTTTIT EPPSGNLQNG REKMKKVPLY LEEDIRPEMR EDIHDPSYQD  60
   61 EEGPPPKLEY VWRNIILMAL LHVGALYGIT LIPSSKVYTL LWGIFYYLIS ALGITAGAHR 120
  121 LWSHRTYKAR LPLRIFLIIA NTMAFQNDVY EWARDHRAHH KFSETHADPH NSRRGFFFSH 180
  181 VGWLLVRKHP AVKEKGGKLD MSDLKAEKLV MFQRRYYKPG LLLMCFILPT LVPWYCWGET 240
  241 FLHSLFVSTF LRYTLVLNAT WLVNSAAHLY GYRPYDKNIQ SRENILVSLG AVGEGFHNYH 300
  301 HAFPYDYSAS EYRWHINFTT FFIDCMAALG LAYDRKKVSK AAVLARIKRT GDGSHKSS

Type	Start	End	Confidence
Cytoplasmic	1	70	0.99
Transmembrane Helix	71	92	0.89
Non-Cytoplasmic	93	101	0.73
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	215	0.96
Transmembrane Helix	216	237	0.88
Non-Cytoplasmic	238	249	0.76
Transmembrane Helix	250	272	0.70
Cytoplasmic	273	283	0.76
Transmembrane Helix	284	301	0.49
Non-Cytoplasmic	302	313	0.60
Transmembrane Helix	314	333	0.60
Cytoplasmic	334	358	0.90