YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13277957, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.57
Transmembrane Helix	26	48	0.87
Non-Cytoplasmic	49	53	0.47
Transmembrane Helix	54	76	0.66
Cytoplasmic	77	78	0.44
Transmembrane Helix	79	98	0.72
Non-Cytoplasmic	99	104	0.63
Transmembrane Helix	105	126	0.87
Cytoplasmic	127	140	0.89
Transmembrane Helix	141	160	0.87
Non-Cytoplasmic	161	176	0.60
Transmembrane Helix	177	198	0.85
Cytoplasmic	199	204	0.61
Transmembrane Helix	205	223	0.89
Non-Cytoplasmic	224	273	0.93
Transmembrane Helix	274	293	0.91
Cytoplasmic	294	311	0.83
Transmembrane Helix	312	330	0.89
Non-Cytoplasmic	331	382	0.91
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.91
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	455	0.86
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.88
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	640	0.99
Transmembrane Helix	641	663	0.90
Non-Cytoplasmic	664	665	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTLSPAV TATDAPIPSY ERIRNAADIS VIVIYFVVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIAMGG FEWNALVLVV VLGWIFVPIY 120
  121 IKAGVVTMPE YLRKRFGGKR IQIYLSVLSL LLYIFTKISA DIFSGAIFIN LALGLDIYLA 180
  181 IFILLAITAL YTITGGLAAV IYTDTLQTAI MLVGSFILTG FAFNEVGGYE AFMDKYMKAI 240
  241 PTKVSNGNFT AKEECYTPRA DSFHIFRDPI TGDMPWPGLI FGLAILALWY WCTDQVIVQR 300
  301 CLSAKNMSHV KAGCTLCGYL KLLPMFLMVM PGMISRILYT EKIACVLPEE CQKYCGTPVG 360
  361 CTNIAYPTLV VELMPNGLRG LMLSVMMASL MSSLTSIFNS ASTLFTMDIY TKIRKKASEK 420
  421 ELMIAGRLFI LVLIGISIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFCKRV 480
  481 NEQGAFWGLI LGFLIGISRM ITEFAYGTGS CMEPSNCPKI ICGVHYLYFA IILFVISVIT 540
  541 ILIISFLTKP IPDVHLYRLC WSLRNSKEER IDLDAGEEED IPEDSKDTIE IDTEAPQKKK 600
  601 GCFRRAYDLF CGLDQDKGPK MTKEEEEAMK MKMTDTSEKP LWRTVVNING IILLAVAVFC 660
  661 HAYFA