YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28300414, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	148	0.80
Transmembrane Helix	149	165	0.72
Non-Cytoplasmic	166	180	0.73
Transmembrane Helix	181	199	0.89
Cytoplasmic	200	206	0.62
Transmembrane Helix	207	226	0.90
Non-Cytoplasmic	227	257	0.88
Transmembrane Helix	258	280	0.86
Cytoplasmic	281	286	0.90
Transmembrane Helix	287	309	0.92
Non-Cytoplasmic	310	343	0.90
Transmembrane Helix	344	366	0.85
Cytoplasmic	367	380	0.83
Transmembrane Helix	381	402	0.78
Non-Cytoplasmic	403	414	0.60
Transmembrane Helix	415	434	0.91
Cytoplasmic	435	442	0.54
Transmembrane Helix	443	462	0.72
Non-Cytoplasmic	463	473	0.61
Transmembrane Helix	474	501	0.82
Cytoplasmic	502	660	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRTVSDGGE DFDGDVCSQT ASQRHTDSTH HHHGYKVGFP PAKGVFAEFA EGVKETFFAD  60
   61 DPLREYKDQP RSKKLWLSLV HLFPVLDWSR SYTFGKFKGD LVAGLTIASL CIPQDIGYAK 120
  121 LANLQPHVGL YSSFVPPLIY ALMGSSRDIA IGPVAVVSLL LGTLLQEEID PVKNPLEYSR 180
  181 LAFTATFFAG ITQAMLGFFR LGFIIEFLSH AAIVGFMAGA AITIALQQLK GLLGIAKFTK 240
  241 KSDIISVMES VWGNVQHGWN WQTILIGSSF LAFLLTTKYI AKKNKKLFWV SAIAPLISVV 300
  301 ISTFCVYITR ADKQGVAIVK NIKQGINPPS FDLIYWSGPY LAKGFRIGVV SGMVALTEAI 360
  361 AIGRTFAAMK DYQIDGNKEM VALGTMNIVG SMTSCYVATG SFSRSAVNYM AGCKTAVSNV 420
  421 VMAIVVMLTL LLITPLFKYT PNAILASIII NAVVNLVDYE TAYLIWKVDK MDFVALLGAF 480
  481 FGVVFASVEY GLLIAVAISL GKILLQVTRP RTALLGNLPR TTIYRNVEQY PEATKVPGVM 540
  541 IVRVDSAIYF TNSNYVKERI LRWLRDEEEQ QQEQKLSKTE FLIVELSPVT DIDTSGIHAL 600
  601 EELLKALEKR KIQLILANPG PAVIQKLRSA KFTDLIGDDK IFLSVGDAVK KFAPKSSLNV 660
  661