YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125569591, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEQPRAAA EGGGETLMEK IADKLHIGGD GSSSDSDADE RKQPKPSAPP APAEVATESF  60
   61 VDSAAAAAAE AKAKVFRLFG REEPIHKVLG GGKPADVFLW RNRNISAGVL GGATAIWILF 120
  121 ELLGYHLLTF VCHGLIFSLG LLFLWSNASS FINKSPPRIP EVIIPEDLVV NIALSTRYEI 180
  181 NRAFANLRQI ALGRDIKKFL IVIAGLWLLS VLGSCCNFLT LVYIVFVVLH TVPILYEKYE 240
  241 DQIDSYGEKG WVEIKKQYAV LDAKVLSKVP RGPLKDKKH

Type	Start	End	Confidence
Cytoplasmic	1	101	0.98
Transmembrane Helix	102	120	0.90
Non-Cytoplasmic	121	126	0.64
Transmembrane Helix	127	148	0.89
Cytoplasmic	149	199	0.95
Transmembrane Helix	200	226	0.87
Non-Cytoplasmic	227	279	0.95