YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945532
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQIGNTNA TFSGSGSGSG TNVASIAESV AESGPDFDAL RAACETRLNA SGQLAGSGGP  60
   61 GAEAGTHCAG TFDGWLCWPD TAVGTSAYEL CPDFITGFDP ARYAHKECGL DGEWFKHPLT 120
  121 NKTWSNYTTC VNLEDLNWRH TVNLISEVGY GTSLLAILLS LAILGYFKSL KCARITLHMN 180
  181 LFASFAANNS LWLVWYLLVM PNSELLHQSP MRCVALHITL HYFLLSNYSW MLCEGFYLHT 240
  241 VLVAAFISEK RLVKWLIAFG WGSRPSSYSS IAWLAVWAAR PRTIVTAG

Type	Start	End	Confidence
Non-Cytoplasmic	1	147	0.83
Transmembrane Helix	148	167	0.93
Cytoplasmic	168	176	0.74
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	225	0.78
Transmembrane Helix	226	247	0.78
Cytoplasmic	248	256	0.71
Transmembrane Helix	257	279	0.61
Non-Cytoplasmic	280	288	0.60